IOBIO: intuitive genomics

Tools for Genomic Analysis

Iobio provides free and open-source tools that help to generate gene list, variant interrogation, and more!

ALIGNMENT INSPECTION

bam.iobio

A web app that quickly samples bam files and visualizes a series of metrics.

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VARIANT INTERROGATION

gene.iobio

A web app for investigating potential disease-causing variants.

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GENE LIST GENERATION

genepanel.iobio

A web app for generating list of genes based on suspected conditions and phenotypes.

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VARIANT ANALYSIS WORKFLOW

clin.iobio

A web app to review sequencing and case metrics, candidate variants, and generate report.

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VARIANT INSPECTION

vcf.iobio

A web app that quickly samples vcf files and visualizes a series of metrics.

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SOMATIC MUTATION DISCOVERY

oncogene.iobio

A web app for integrative examination and functional prioritization of tumor mutations.

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ENRICHED VARIANTS VISUALIZATION

cohortgene.iobio

A web app for interpreting genomic patient data in the context of large disease cohort datasets.

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Publications

Clin.iobio: A Collaborative Diagnostic Workflow to Enable Team-Based Precision Genomics

Ward, A., Velinder, M., Di Sera, T., et al.

Journal Personalized Medicine 12, 73 (2022)

Gene.iobio: an interactive web tool for versatile, clinically-driven variant interrogation and prioritization

Di Sera, T., Velinder, M., Ward, A. et al.

Scientific Reports 11, Article number: 20307 (2021)

Genepanel.iobio - an easy to use web tool for generating disease- and phenotype-associated gene lists

Ekawade, A., Velinder, M., Ward, A. et al.

BMC Medical Genomics 12, Article number: 190 (2019)

bam.iobio: a web-based, real-time, sequence alignment file inspector

Miller, C., Qiao, Y., DiSera, T. et al.

Nature Methods 11, 1189 (2014)

Recent Blog Posts

clin.iobio paper

A web-based clinical diagnostic workflow to rapidly diagnose genetic disease

BY Alistair Ward ON Jan 11, 2022

gene.iobio paper

How genomic data is used in clinical diagnostics

BY Alistair Ward ON Nov 16, 2021

clin.iobio released

Comprehensive and guided workflow to review sequencing data and report impactful variants

BY Aditya Ekawade ON Aug 25, 2020

gene.iobio 4.0

Richer Variant Annotations. A Polished User Interface. Powerful New Backend

BY Tony DiSera ON Apr 20, 2020

fibridge - Access huge files in the user's browser externally over HTTP

BY Anders Pitman ON Jun 12, 2019

Vue.js and Vuetify unit testing with Jest

Writing and running test cases while creating a basic SPA

BY Aditya Ekawade ON May 20, 2019

Give Us Feedback

We are constantly trying to improve our apps. If our apps are missing something, let us know how we can improve.
Also we are actively building new applications in numerous biological research areas.
If you feel iobio would be a good fit for your area of research and would like to collaborate contact us!

Open Source

We are fully open-source!
If you find a bug in one of our apps feel free to raise on issue on GitHub or submit a pull request for the respective app!

You can also use our library that is designed to handle streaming data to create interactive visualizations! Full docs here